Gosling.js builds interactive genomic visualisations from declarative specifications, with scalable tracks and linked exploration views.
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Category: Scientific
D-GENIES – interactive dot plots for genome comparisons
D-GENIES compares large genome assemblies with interactive dot plots, revealing sequence rearrangements, inversions and repeated regions.
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IGV-Web App – explore genomic data in a web browser
IGV-Web App lets researchers inspect reference genomes, alignments and variant tracks in a browser using local or remote genomic files.
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Kookbook – recipe manager using structured Markdown files
Kookbook manages Markdown recipe collections on Linux, with searchable titles, ingredient indexes, recipe templates and printing support.
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Machine Learning in Linux: Local AI Studio – local AI toolkit
Local AI Studio combines local LLM chat, Stable Diffusion, Whisper transcription and Kokoro text-to-speech in one Linux interface.
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Foodsoft – web-based software to manage food cooperatives
Foodsoft is open source web-based software for managing food cooperatives, including orders, products, members and accounting.
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CGView.js – interactive circular and linear genome maps
CGView.js is a library for creating interactive circular and linear genome maps with features, plots and sequence-level navigation.
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SynFlow – visualize genome alignments and structural variation
SynFlow explores genome alignments, synteny and structural rearrangements with interactive multi-genome visualizations.
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Chromoscope – multiscale structural variation genome browser
Chromoscope is an interactive web genome browser for exploring structural variation and copy-number patterns across human cancer genomes.
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19 Best Free and Open Source Linux Mapping Tools
This roundup includes mapping software which offers quick access to maps all across the world. We also include some specialised tools.
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13 Best Free and Open Source Linux Robotics Software
Robotics is the branch of artificial intelligence concerned with the study of robots. We recommend the best robotics software for Linux.
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Quantum ESPRESSO – electronic-structure and materials modelling suite
Quantum ESPRESSO is a suite for electronic-structure calculations and materials modelling using density-functional theory, plane waves and pseudopotentials.
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OpenMD – molecular dynamics simulation engine
OpenMD is a molecular dynamics engine for simulating liquids, proteins, nanoparticles, interfaces and systems with orientational degrees of freedom.
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4 Best Free and Open Source Cheminformatics Tools
Explore the best free and open source cheminformatics tools for analysing chemical structures, compounds, reactions and molecular data.
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OpenMolcas – multiconfigurational quantum chemistry package
OpenMolcas is a quantum chemistry package centred on multiconfigurational electronic-structure methods including CASSCF and CASPT2.
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MOPAC – semiempirical quantum chemistry package
MOPAC is a semiempirical quantum chemistry package for fast molecular and materials calculations, geometry optimisation and reaction studies.
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7 Best Free and Open Source Chemical Structure Drawing Tools
Explore the best free and open source software for drawing chemical structures, molecular diagrams, reactions, and structural formulas.
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Maputnik – visual editor for MapLibre map styles
Maputnik is a visual editor for MapLibre styles with browser-based design, local editing workflows, CLI support and tooling.
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7 Best Free and Open Source Molecular Editors and Visualisation
Discover the best free and open source molecular editors for molecular modelling, visualization, chemistry and structural biology.
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Maps – map viewer designed for elementary OS
Maps is a lightweight elementary OS map viewer with place search, current-location jumping, keyboard navigation and geo URI support.
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