Oceananigans.jl is a Julia package for simulating incompressible geophysical fluid dynamics on CPUs and GPUs.
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Category: Scientific
10 Best Free and Open Source Linux Statistical Analysis Tools
We recommend the finest software for performing statistical analysis. Open source goodness at its best.
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Foldseek – compare large protein structure datasets
Foldseek is a fast and sensitive command-line tool for comparing large protein structure datasets.
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SeaDAS Toolbox – NASA ocean colour data processing tools
SeaDAS Toolbox contains the core NASA SeaDAS science-processing integration and tools used with the Sea, Earth and Atmosphere Data Analysis System.
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Scanpy – scalable toolkit for analysing single-cell gene expression data
Scanpy is a scalable toolkit for analysing single-cell gene expression data. It can handle datasets containing more than one million cells.
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Orfeo ToolBox – remote sensing image processing library
OTB is a collection of remote-sensing image processing algorithms for very large optical, multispectral, hyperspectral and radar images.
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SNAP Engine – Earth observation processing platform
SNAP Engine is the core processing platform behind the European Space Agency’s Sentinel Application Platform (SNAP).
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SeqKit – manipulate FASTA and FASTQ files
SeqKit is a fast, cross-platform command-line toolkit for manipulating FASTA and FASTQ files.
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MultiQC – aggregate results from bioinformatics analyses
MultiQC is a reporting tool that aggregates results from multiple bioinformatics analyses and samples into a single report
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wradlib – process weather radar data
wradlib is a Python library designed to assist with the processing of weather radar data.
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PyTorch Lightning – deep learning framework
PyTorch Lightning is a deep learning framework for pretraining and fine-tuning models with PyTorch.
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Metview Python – Python interface to Metview
Metview Python provides a Python interface to Metview, a meteorological workstation and batch system.
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NCO – manipulate and analyse data stored in netCDF-accessible formats
NCO (netCDF Operators) is a suite of command-line programs for manipulating and analysing data stored in netCDF-accessible formats.
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VAPOR – interactive 3D visualization environment
VAPOR (Visualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers) is an interactive 3D visualization environment for scientific data.
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tinygrad – compact end-to-end deep learning stack
tinygrad is a compact end-to-end deep learning stack designed to sit somewhere between PyTorch and micrograd.
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MindSpore – deep learning framework
MindSpore is a deep learning framework for training and inference across cloud, edge, and mobile environments.
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Equinox – JAX library
Equinox is a JAX library for building neural networks and other parameterised models. It provides a PyTorch-like approach
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Pingouin – statistical package for Python
Pingouin is a statistical package for Python designed to provide simple yet comprehensive functions for commonly used statistical tests.
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SeisBench – toolbox for applying machine learning techniques to seismology
SeisBench provides a common interface for seismic datasets, pretrained models and data-generation pipelines.
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Minisforum N5 Pro NAS – NPU with FastFlowLM
FastFlowLM puts the Minisforum N5 Pro’s 50 TOPS AMD XDNA 2 NPU to work under Linux for local LLMs and private AI server workloads.
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