GIVE (Genomic Interactive Visualization Engine) is a HTML5 library that lets you embed genomic visualization panels as you would standard HTML elements to build a customized genome browser to visualize data from public deposits (such as ENCODE) and/or in-house data.
It consists of three major parts: GIVE Web Components, the client-side codes running in browsers, implemented by HTML5, GIVE server, including bare server codes, implemented by PHP, and GIVE Data Source.
GIVE uses Web Components, specifically Polymer Library for user interface and Scaled Vector Graphics (SVG) 1.1 for graphics. These components are supported by all major browsers.
This is free and open source software.
Website: zhong-lab-ucsd.github.io/GIVE_homepage
Support: GitHub Code Repository
Developer: Zhong Lab @ UCSD
License: Apache License 2.0
GIVE is written in JavaScript and HTML. Learn JavaScript with our recommended free books and free tutorials.
Related Software
| Web-Based Desktop Genome Browsers | |
|---|---|
| Ensembl | Resource for geneticists, molecular biologists and other researchers |
| Genome Browser | Interactively visualize genomic data |
| GDV | Exploration and analysis of eukaryotic RefSeq genome assemblies |
| HiGlass | Explore and compare genomic contact matrices and tracks |
| igv.js | Embeddable genomic visualization |
| NGB | Web-based NGS data viewer |
| JBrowse 2 | Modern React-based genome browser |
| trackplot | Visualize various next-generation sequencing data |
| GIVE | Genomic Interactive Visualization Engine |
| Genoverse | HTML5 scrollable genome browser |
| Epigenome Browser | Visualization, integration and analysis tools for epigenomic datasets |
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