trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
This is free and open source software.
Key Features
- Supports almost all NGS data format, including:
- BAM.
- Bed.
- Depth file generated by samtools depth.
- bigBed [pyBigWig optional].
- bigWig [pyBigWig optional].
- naive Hi-C format [hicmatrix optional].
- Support various file formats as input.
- Support strand-aware coverage plot.
- Visualize coverage by heatmap, including HiC diagram.
- Visualize protein domain based the given gene id.
- Demultiplex the single-cell RNA/ATAC-seq which used cell barcode into cell population.
- Support visualizing individual full-length reads in read-by-read style.
- Support visualize circRNA sequencing data.
Website: github.com/ygidtu/trackplot
Support:
Developer: Zhong Lab @ UCSD
License: BSD 3-Clause ‘New’ or ‘Revised’ License
trackplot is written in Python. Learn Python with our recommended free books and free tutorials.
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