Chemistry

XDrawChem – molecule structure drawing

XDrawChem is a 2D editor for chemical structures and reactions.

It mirrors the abilities of the commercial ChemDraw suite and has file compatibility with it as well as other chemical formats through OpenBabel.

It can read and write MDL Molfiles, and read ChemDraw text and binary files, to allow sharing between XDrawChem and other chemistry applications, and it can create images in popular formats like PNG and EPS.

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

Key Features

  • Fixed length, fixed angle drawing.
  • Automatic alignment of figures. Detects structures, text, and arrows and places them automatically.
  • Automatically draw rings and other structures – has all standard amino acids and nucleic acids in built-in library.
  • Retrieve structures from a network database based on CAS number, formula, or name. Can also retrieve information on a molecule in a drawing.
  • Draw symbols such as partial charge, radicals, etc.
  • Read MDL Molfiles, CML [Chemical Markup Language, defined in J. Chem. Inf. Comput. Sci.39(1999), 928-942], ChemDraw binary format, ChemDraw XML text format.
  • Write MDL Molfiles, CML, ChemDraw XML text format.
  • Also read and write any format supported by the current release of OpenBabel.
  • Export pictures in PNG, Windows bitmap (*.bmp), Encapsulated PostScript (EPS), and Scalable Vector Graphics (SVG).
  • Generate 3-D structures with the help of the external program BUILD3D.
  • Online help, including tool tips.
  • 13C-NMR prediction, based on Bremser W, Mag. Res. Chem.23(4):271-275.
  • 1H-NMR prediction, based on additive rules and functional group lookup methods, described in Pretsch, Clerc, Seibl, Simon, “Tables of Spectral Data for Structure Determination of Organic
    Compounds”, 2ed., 1989, Springer-Verlag.
  • Simple IR prediction.
  • Simple pKa estimation.
  • Octanol-water partition coefficient estimation.
  • Reaction analysis: gas-phase enthalpy change estimate, 1H NMR and 13C NMR comparison
  • Integration with OpenBabel, allowing XDrawChem to read and write over 20 different chemical file formats.

Website: github.com/bryanherger/xdrawchem
Support:
Developer: Bryan Herger
License: GNU General Public License v2.0

XDrawChem

XDrawChem is written in C++ and C. Learn C++ with our recommended free books and free tutorials. Learn C with our recommended free books and free tutorials.


Related Software

Chemistry Tools
GROMACSVersatile package to perform molecular dynamics
tomvizProcess, visualize, and analyze 3D tomographic data
Psi4Ab initio quantum chemistry software
NWChemAb initio computational chemistry software package
PyMOLOpenGL molecular graphics system written in Python
LAMMPSClassical molecular dynamics simulator
CP2KAtomistic simulations of solid state, liquid, molecular and biological systems
RDKitCheminformatics and machine-learning software
GAMESSGeneral ab initio quantum chemistry package
AvogadroAdvanced molecular editor
OpenMMHigh-performance toolkit for molecular simulation
GabeditGraphical user interface to computational chemistry packages
Open BabelConverts and manipulates chemical data files
JmolViewer for three-dimensional chemical structures
pyscfQuantum chemistry framework
KalziumFull-featured chemistry application for KDE 5
KetcherWeb-based chemical structure editor
XDrawChem2D editor for chemical structures and reactions
CanteraChemical kinetics, thermodynamics, and transport tool suite
OracOpenMP/MPI molecular dynamics engine to simulate solvated biomolecules
JChemPaintChemical 2D structure editor
MPQCComputes the properties of molecules, ab initio
IndigoUniversal cheminformatics toolkit for working with molecules and reactions
GPAWPython package for density-functional theory calculations
DFTB+General package for performing fast atomistic calculations
BKChem2D molecule editor written in Python
MDynaMixGeneral purpose molecular dynamics
ChemCanvas2D chemical drawing tool
MoleQueueAbstract, manage, and coordinate the execution of tasks

Read our verdict in the software roundup.


Best Free and Open Source Software Explore our comprehensive directory of recommended free and open source software. Our carefully curated collection spans every major software category.

This directory is part of our ongoing series of informative articles for Linux enthusiasts. It features hundreds of detailed reviews, along with open source alternatives to proprietary solutions from major corporations such as Google, Microsoft, Apple, Adobe, IBM, Cisco, Oracle, and Autodesk.

You’ll also find interesting projects to try, hardware coverage, free programming books and tutorials, and much more.

Discovered a useful open source Linux program that we haven’t covered yet? Let us know by completing this form.
Subscribe
Notify of
guest
0 Comments
Oldest
Newest Most Voted
Inline Feedbacks
View all comments