Chemistry

Avogadro – advanced molecule editor and visualizer

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

It offers flexible rendering and a powerful plugin architecture.

Avogadro is based on top of existing chemistry software, including Open Babel.

In the future, it will offer strong scripting abilities to allow for automated demos, submission of calculations to local computational resources, and user-defined customization.

Key Features

  • Supports multi-threaded rendering and computation.
  • “Auto-optimize” tool which allows you to continue to build and modify, during molecular mechanics optimization.
  • Built-in molecular mechanics (including MMFF94 and UFF).
  • Input generation for Gaussian and GAMESS-US, with more packages to come.
  • Support for crystallographic unit cells.
  • Visualization of isosurfaces and orbitals, including Gaussian cubes, OpenDX, and Gaussian fchk files.
  • Open Babel import of files.
  • Plugin architecture for developers, including rendering, interactive tools, commands, and Python scripts.
  • Interfaces to many common computational packages.
  • Embedded Python interpreter.
  • Well defined public API, library and Python bindings for development.
  • Translations into French, German, Italian, Russian, Spanish, Chinese and others.

Website: github.com/openchemistry/avogadrolibs
Support:
Developer: Shahzad Ali, Ross Braithwaite, James Bunt, Donald Ephraim Curtis, Geoffrey Hutchison, Marcus D. Hanwell, Benoit Jacob, Carsten Niehaus
License: GNU GPL v2

Avogadro

Avogadro is written in Python and C++. Learn Python with our recommended free books and free tutorials. Learn C++ with our recommended free books and free tutorials.


Related Software

Chemistry Tools
GROMACSVersatile package to perform molecular dynamics
tomvizProcess, visualize, and analyze 3D tomographic data
Psi4Ab initio quantum chemistry software
NWChemAb initio computational chemistry software package
PyMOLOpenGL molecular graphics system written in Python
LAMMPSClassical molecular dynamics simulator
CP2KAtomistic simulations of solid state, liquid, molecular and biological systems
RDKitCheminformatics and machine-learning software
GAMESSGeneral ab initio quantum chemistry package
AvogadroAdvanced molecular editor
OpenMMHigh-performance toolkit for molecular simulation
GabeditGraphical user interface to computational chemistry packages
Open BabelConverts and manipulates chemical data files
JmolViewer for three-dimensional chemical structures
pyscfQuantum chemistry framework
KalziumFull-featured chemistry application for KDE 5
KetcherWeb-based chemical structure editor
XDrawChem2D editor for chemical structures and reactions
CanteraChemical kinetics, thermodynamics, and transport tool suite
OracOpenMP/MPI molecular dynamics engine to simulate solvated biomolecules
JChemPaintChemical 2D structure editor
MPQCComputes the properties of molecules, ab initio
IndigoUniversal cheminformatics toolkit for working with molecules and reactions
GPAWPython package for density-functional theory calculations
DFTB+General package for performing fast atomistic calculations
BKChem2D molecule editor written in Python
MDynaMixGeneral purpose molecular dynamics
ChemCanvas2D chemical drawing tool
MoleQueueAbstract, manage, and coordinate the execution of tasks

Read our verdict in the software roundup.


Best Free and Open Source Software Explore our comprehensive directory of recommended free and open source software. Our carefully curated collection spans every major software category.

This directory is part of our ongoing series of informative articles for Linux enthusiasts. It features hundreds of detailed reviews, along with open source alternatives to proprietary solutions from major corporations such as Google, Microsoft, Apple, Adobe, IBM, Cisco, Oracle, and Autodesk.

You’ll also find interesting projects to try, hardware coverage, free programming books and tutorials, and much more.

Discovered a useful open source Linux program that we haven’t covered yet? Let us know by completing this form.
Subscribe
Notify of
guest
0 Comments
Oldest
Newest Most Voted