Bioinformatics Archives - Page 2 of 2

Clustal Omega – multiple sequence alignment program

Clustal Omega is a multiple sequence alignment program for protein and DNA/RNA using seeded guide trees and HMM profile-profile techniques.

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.

The Taverna workbench is an open source software tool for designing and executing bioinformatics workflows created by the myGrid project.

geWorkbench (genomics Workbench) is a Java-based open-source platform for integrated genomics.

The Bioclipse project is a visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).

GROMACS is a molecular dynamics simulator, with building and analysis tools. It’s a versatile package to perform molecular dynamics.

Bandage is a program for visualising de novo assembly graphs. It’s written in C++ and runs under Linux, macOS, and Windows.

Jalview is a cross-platform program for multiple sequence alignment editing, visualisation and analysis. It’s written in Java.