ripperX is an open source graphical interface for ripping CD audio tracks and encoding them to Ogg, MP2, MP3, or FLAC formats.
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Sound Juicer – audio CD extractor
Sound Juicer is a lean CD ripper using GTK+ and GStreamer. It extracts audio from CDs and converts it into audio files.
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Audex – tool for ripping compact discs
Audex is an easy to use audio CD ripping application. Audex works together with command line encoders in general.
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Bioconductor – tools for the analysis and comprehension of high-throughput genomic data
Bioconductor is a software project which provides tools for the analysis and comprehension of high-throughput genomic data.
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Biopython – tools for biological computation written in Python
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
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BioPerl – computational molecular biology tools
BioPerl is a collection of Perl tools for computational molecular biology used by large and small academic laboratories, and pharmaceuticals.
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Integrative Genomics Viewer – high-performance visualization tool for interactive exploration of large, integrated genomic datasets
The Integrative Genomics Viewer is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.
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InterMine – integrate biological data sources
InterMine is a data warehouse system for the integration and analysis of biological data.
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UGENE – bioinformatics software
UGENE is a cross-platform set of integrated bioinformatics software integrating well-known biological tools and algorithms.
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BioJava – Java framework for bioinformatics
BioJava is a project dedicated to providing Java tools for processing biological data.
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bedtools – powerful toolset for genome arithmetic
The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.
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EMBOSS – software analysis package for molecular biology
EMBOSS is The European Molecular Biology Open Software Suite developed for the needs of the molecular biology (e.g. EMBnet) user community.
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Basic Local Alignment Search Tool – find regions of similarity between biological sequences
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
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Taverna Workbench – tools for designing and executing workflow
The Taverna workbench is an open source software tool for designing and executing bioinformatics workflows created by the myGrid project.
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geWorkbench – software platform for integrated genomic data analysis
geWorkbench (genomics Workbench) is a Java-based open-source platform for integrated genomics.
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Bioclipse – workbench for the life sciences
The Bioclipse project is a visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).
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VuFind – search and browse through library resources
VuFind is a library resource portal designed and developed for libraries by libraries.
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Koha – scalable library management system
Koha is a highly popular, award-winning open source integrated library system. Koha offers cataloging, searching, and an acquisitions system.
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Evergreen – library software
Evergreen is an Integrated Library System (ILS) originally developed by the Georgia Public Library Service.
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PMB – library automation system
PMB is a French library automation system based on PHP and MySQL. It is a highly customizable productivity tool.
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