bqplot creates interactive charts inside Jupyter using widgets, linked plots, selectable marks and custom plotting controls.
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Category: Scientific
plotnine – grammar of graphics for statistical plots
plotnine builds layered statistical graphics using a grammar of graphics, with faceting, statistical transforms, scales and themes.
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Plotly – interactive scientific and statistical visualisation
Plotly creates interactive scientific, statistical and geographic charts with animations, hover controls and HTML export capabilities.
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Vega-Altair – declarative statistical visualisation
Vega-Altair defines interactive statistical charts declaratively with Vega-Lite, composable views, transformations and selections.
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Diagrams – generate cloud architecture diagrams from code
Diagrams draws cloud and infrastructure architectures from code using provider icons, connected nodes, clusters and Graphviz rendering.
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VisPy – GPU-accelerated scientific visualisation
VisPy delivers GPU-accelerated scientific visualisation with interactive 2D and 3D scenes, OpenGL rendering and custom graphics.
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seaborn – statistical data visualisation library
seaborn provides statistical visualisation for distributions, regression, categorical comparisons and faceted plots with matplotlib.
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Bokeh – interactive visualisations and analytical dashboards
Bokeh creates interactive browser plots, linked selections, streaming visualizations and data dashboards with customizable widgets.
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matplotlib – publication-quality plotting and visualisation
matplotlib creates publication-quality scientific plots, animated figures and interactive charts with flexible layouts and export formats.
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SeqViz – protein sequence viewer
SeqViz is a DNA, RNA, and protein sequence viewer written in the TypeScript programming language.
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NAMD – high-performance simulation of large biomolecular systems
NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems.
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VMD – molecular visualization program
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
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simuPOP – forward-time population genetics simulation
simuPOP is a population genetics simulator for modelling mutation, migration, selection, recombination and evolving populations.
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MUSCLE – multiple sequence and structure alignment
MUSCLE aligns biological sequences and protein structures, generates alternative alignments and helps assess phylogenetic robustness.
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SeaView – graphical sequence alignment and phylogenetic analysis
SeaView provides graphical DNA and protein sequence alignment, phylogenetic tree construction and evolutionary analysis on Linux.
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TREE-PUZZLE – maximum likelihood analysis for nucleotide, amino acid, and two-state data
TREE-PUZZLE (previously known as PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling.
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TreeView X – phylogeny tree viewer
TreeView X is an open source and multi-platform program to display phylogenetic trees. It can read and display NEXUS and Newick format tree files.
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OpenEMR – electronic health records and medical practice management
OpenEMR is free and open source software for electronic health records, appointments, medical billing and patient administration.
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GNU Health – health and hospital information system
GNU Health is a free and open source health information system offering patient records, hospital management, laboratory services and billing.
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GNUmed – electronic medical records for clinical practice
GNUmed manages electronic patient records for outpatient care, including clinical notes, medications, test results, allergies and documents.
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