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Category: Scientific

Data Science

pandera – dataframe validation and data quality testing

October 20, 2023 Steve Emms Scientific

pandera validates dataframes with schemas, column checks, statistical constraints, custom rules, and support for multiple data backends.

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Data Science

Pydantic – data validation using Python type hints

October 20, 2023 Steve Emms Scientific

Pydantic validates structured data using Python type hints, with custom validators, strict typing, serialization, and JSON Schema generation.

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Data Science

Cerberus – lightweight and extensible data validation library

October 20, 2023 Steve Emms Scientific

Cerberus validates dictionaries with declarative schemas, type checks, dependencies, normalization rules, and extensible custom validators.

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Data Science

Valideer – lightweight data validation and adaptation library

October 20, 2023 Steve Emms Scientific

Valideer checks and transforms structured values with declarative schemas, built-in validators, custom rules, and detailed errors.

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Data Science

Colander – serialization, deserialization and validation library

October 20, 2023 Steve Emms Scientific

Colander validates and converts structured data using schemas for mappings, sequences, strings, numbers, dates, and custom types.

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Data Science

Voluptuous – Python data validation library

October 20, 2023 Steve Emms Scientific

Voluptuous validates nested data structures using composable schemas, callable validators, required fields, transformations, and error reporting.

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Data Science

Schematics – Python library to combine types into structures, validate them, and transform the shapes of data

October 20, 2023 Steve Emms Scientific

Schematics is a Python library to combine types into structures, validate, and transform the shapes of your data based on simple descriptions.

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Data Science

schema – library for validating Python data structures

October 20, 2023 Steve Emms Scientific

schema checks Python data structures using readable validation rules, nested schemas, optional fields, custom checks, and data conversion.

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Data Science

jsonschema – implementation of JSON Schema for Python

October 20, 2023 Steve Emms CLI, Scientific

jsonschema validates JSON-compatible data against schemas, supports multiple JSON Schema drafts, and provides detailed error reporting.

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Data Science

Polynote – different kind of notebook

October 19, 2023 Steve Emms Scientific

Polynote is an experimental polyglot notebook environment. It supports mixing multiple languages in one notebook.

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Data Science

Spark Notebook – Interactive and Reactive Data Science using Scala and Spark

October 19, 2023 Eilidih Parris Scientific

The Spark Notebook is aimed at enterprise environments, providing data scientists and data engineers with an interactive web-based editor.

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Data Science

BeakerX – Successor to Beaker Notebook

October 19, 2023 Eilidih Parris Scientific

BeakerX is a collection of kernels and extensions to the Jupyter interactive computing environment.

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Data Science

Apache Zeppelin – collaborative data analytics notebook

October 19, 2023 Eilidih Parris Documents, Scientific, Web Apps

Apache Zeppelin is a collaborative notebook for SQL, Spark, Python and other interpreters, with charts, forms, scheduling and sharing.

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Data Science

nteract – Notebooks on your Desktop

October 19, 2023 Eilidih Parris Scientific

nteract is a desktop-based interactive computing application that is focused on accessibility and composability.

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Data Science

Jupyter Notebook – Data Science Notebook

October 19, 2023 Eilidih Parris Scientific

The Jupyter Notebook is a server-client web application to create/share documents containing live code, equations, and visualizations.

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Data Science

JupyterLab – Extensible Notebook and Development Environment

October 19, 2023 Eilidih Parris Scientific, Web Apps

JupyterLab is a flexible notebook and code environment with interactive consoles, debugging, collaboration, terminals and extensions.

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DNA

Apollo – genome annotation editor

October 18, 2023 Steve Emms Scientific

Apollo is a collaborative, real-time, genome annotation editor. The stack is a Java web application / database backend.

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DNA

Artemis – genome viewer and annotation tool

October 18, 2023 Steve Emms Scientific

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses.

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DNA

JBrowse – fast, scalable genome browser

October 18, 2023 Steve Emms Scientific

JBrowse is a fast, scalable genome browser built completely with JavaScript and HTML5. It can run on your desktop, or embedded in a website.

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DNA

Integrated Genome Browser – visualization for genome-scale data

October 18, 2023 Steve Emms Scientific

Integrated Genome Browser (IGB) is a fast, free, and highly customizable genome browser you can use to view and explore big genomic datasets.

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