Scientific Archives - Page 34 of 58

bedtools – powerful toolset for genome arithmetic

The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.

EMBOSS is The European Molecular Biology Open Software Suite developed for the needs of the molecular biology (e.g. EMBnet) user community.

Clustal Omega is a multiple sequence alignment program for protein and DNA/RNA using seeded guide trees and HMM profile-profile techniques.

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.

The Taverna workbench is an open source software tool for designing and executing bioinformatics workflows created by the myGrid project.

geWorkbench (genomics Workbench) is a Java-based open-source platform for integrated genomics.

The Bioclipse project is a visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).

Great libraries and tools that are ideal for mathematicians working with Python.

statsmodels is a Python package that provides a complement to SciPy for statistical computations.

mpmath is a Python library for arbitrary-precision floating-point arithmetic.