basilisk provides a standardized mechanism for handling Python dependencies within Bioconductor packages.
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Tag: R
pyRserve – library for connecting Python to R
pyRserve is a Python client for Rserve (network layer to remote R server).
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PypeR – Python interface to R
PypeR provides a lightweight interface to use R in Python by pipe.
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reticulate – R Interface to Python
The reticulate package provides a comprehensive set of tools for interoperability between Python and R.
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rpy2 – interface to use R from Python
rpy2 is an interface to R running embedded in a Python process.
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ggplot2 – data visualization package for the programming language R
ggplot2 is a system for declaratively creating graphics, based on The Grammar of Graphics, the idea that you can build every graph from the same few components.
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Blogdown – powerful and customizable website output format for R Markdown
The goal of the blogdown package is to provide a powerful and customizable website output format for R Markdown.
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bookdown – R package to facilitate writing books
bookdown is an R package for authoring books and technical documents with R Markdown.
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rmarkdown – dynamic documents for R
The rmarkdown package helps you create dynamic analysis documents that combine code, rendered output (such as figures), and prose.
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Bioconductor – tools for the analysis and comprehension of high-throughput genomic data
Bioconductor is a software project which provides tools for the analysis and comprehension of high-throughput genomic data.
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tidytext – text mining using dplyr, ggplot2, and other tidy tools
tidytext is text mining for word processing and sentiment analysis using ‘dplyr’, ‘ggplot2’, and other tidy tools.
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quanteda – R package for Quantitative Analysis of Textual Data
quanteda (Quantitative Analysis of Textual Data) is an R package for managing and analyzing text.
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wordcloud – create attractive word clouds, visualize differences and similarity between documents
wordcloud creates attractive word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots.
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tm – Text Mining Infrastructure in R
tm (shorthand for Text Mining Infrastructure in R) provides a framework for text mining applications within R.
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stringi – fast and portable character string processing in R
stringi is an R package for fast, portable, correct, consistent, and convenient string/text processing in any locale or character encoding.
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stringr – string manipulation in R
The stringr package provides a cohesive set of functions designed to make working with strings as easy as possible.
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UDPipe – R package for Tokenization, Tagging, Lemmatization and Dependency Parsing
UDPipe provides language-agnostic tokenization, tagging, lemmatization and dependency parsing of raw text.
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Word Vectors – R package for building and exploring word embedding models
Word Vectors is an R package for building and exploring word2vec and other word embedding models.
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spacyr – R wrapper around the Python spaCy package
spacyr provides a convenient R wrapper around the Python spaCy package.
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RStudio – enterprise-ready professional software for R
RStudio is an integrated development environment for R. RStudio combines an intuitive user interface with powerful coding tools.
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