The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.
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Tag: C
EMBOSS – software analysis package for molecular biology
EMBOSS is The European Molecular Biology Open Software Suite developed for the needs of the molecular biology (e.g. EMBnet) user community.
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Clustal Omega – multiple sequence alignment program
Clustal Omega is a multiple sequence alignment program for protein and DNA/RNA using seeded guide trees and HMM profile-profile techniques.
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Basic Local Alignment Search Tool – find regions of similarity between biological sequences
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
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Evergreen – library software
Evergreen is an Integrated Library System (ILS) originally developed by the Georgia Public Library Service.
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Planner – project management software
Planner is a project management tool which supports Gantt charts, resource allocation and integration with other GNOME applications.
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stringi – fast and portable character string processing in R
stringi is an R package for fast, portable, correct, consistent, and convenient string/text processing in any locale or character encoding.
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NcFTP – powerful console FTP client
NcFTP is a console FTP client with bookmarks, background transfers, automatic resume, recursive downloads and command-line utilities.
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tnftp – enhanced portable FTP client
tnftp is the portable NetBSD FTP client with command-line fetching, completion, progress display, proxies, IPv6 and passive mode.
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Yafc – FTP client intended to be a replacement for the standard ftp program
Yafc is an FTP client intended to be a replacement for the standard ftp program.
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BRL-CAD – combinatorial Constructive Solid Geometry (CSG) solid modeling system
The BRL-CAD package is a powerful Constructive Solid Geometry (CSG) solid modeling system with decades of development and production.
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gCAD3D – 3D CAD-CAM software
gCAD3D is a 3D CAD-CAM application which features an integrated 3D OpenGL viewer, a program interpreter for geometry and NC-commands in 3D.
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Marker – Markdown editor
Marker is a simple yet robust markdown editor. This is free and open source software written in the C programming language.
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Wget2 – successor of Wget
Wget2 is a utility for non-interactive download of files. It supports HTTP and HTTPS protocols, and retrieval through HTTP(S) proxies.
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cURL – command line tool and library for transferring data with URLs
cURL is a command line tool and library for transferring data with URLs. There’s also libcurl, a client-side URL transfer library.
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wmweather+ – downloads National Weather Service METAR bulletins, ANV and MRF forecasts
wmweather+ will download the National Weather Serivce METAR bulletins; AVN, ETA, and MRF forecasts; and any weather map.
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Mixxx – DJ mixing software
Mixxx is DJ mixing software with four decks, beat synchronisation, controller mappings, timecode vinyl, effects and music library tools.
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xwax – digital vinyl system for Linux
xwax is a digital vinyl system for Linux, using timecoded records to control audio files for beatmatching, scratching and turntable mixing.
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terminatorX – virtual turntables for digital scratching
terminatorX brings virtual turntable scratching to Linux with multiple decks, MIDI control, effects, recording and a built-in sequencer.
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Internet DJ Console – live internet radio broadcasting
Internet DJ Console streams live radio to Icecast and Shoutcast with dual players, microphone mixing, jingles, VoIP and JACK routing.
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