Apollo is a collaborative, real-time, genome annotation editor.
The stack is a Java web application / database backend and a JavaScript client that runs in a web browser as a JBrowse plugin.
Apollo is designed to support geographically dispersed researchers, and the work of a distributed community is coordinated through automatic synchronization: all edits in one client are instantly pushed to all other clients, allowing users to see annotation updates from collaborators in real-time during the editing process. There are no installation requirements for Annotators.
Key Features
- Apollo is a plug-in for the JBrowse Genome Viewer.
- In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own configuration of the ‘Information Editor’.
- History tracking with undo/redo functions is available.
- Users are able to directly set an annotation to a specific state, choosing from the ‘History’ display.
- Adding and updating PubMed IDs will prompt users with a publication title to confirm their submission.
- Gene Ontology (GO) terms are supported and GO ID auto-completion has been incorporated.
- Users may access a ‘Recent Changes’ page.
- Help page with Apollo specific content is available.
Website: genomearchitect.readthedocs.io
Support: Documentation, GitHub Code Repository
Developer: Generic Model Organism Database Project
License: 2-clause BSD License
Apollo is written in Java and JavaScript. Learn Java with our recommended free books and free tutorials. Learn JavaScript with our recommended free books and free tutorials.
Related Software
| Desktop Genome Browsers | |
|---|---|
| IGV | High-performance visualization genome browser tool |
| IGB | Integrated Genome Browser |
| JBrowse | Fast, scalable genome browser |
| Tablet | Graphical viewer for sequence assemblies and alignments |
| UGENE | Set of integrated bioinformatics software |
| Artemis | Genome viewer and annotation tool |
| Apollo | Instantaneous, collaborative genomic annotation editor |
| SeqMonk | Visualise and analyse high throughput mapped sequence data |
| GW | Fast browser for genomic sequencing data |
| CutePeaks | Cross platform Sanger Trace file viewer |
| ASCIIGenome | Text only genome browser |
| Genome Workbench | Integrated tools for studying and analyzing genetic data |
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