This article identifies our favourite tools which are extremely useful for anyone interested in sequence analysis, molecular modelling, molecular dynamics, phylogenetic analysis and more.
Read more
Tag: biology
10 Best Free and Open Source Linux Biology Tools
Biologists will be eager to use this biology software for research. We pick the finest free and open source biology tools for Linux.
Read more
SeqViz – protein sequence viewer
SeqViz is a DNA, RNA, and protein sequence viewer written in the TypeScript programming language.
Read more
NAMD – high-performance simulation of large biomolecular systems
NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems.
Read more
VMD – molecular visualization program
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
Read more
simuPOP – general-purpose individual-based forward-time population genetics simulation environment
simuPOP is a general-purpose individual-based forward-time population genetics simulation environment.
Read more
MUSCLE – multiple alignment software
MUSCLE is a program for creating multiple alignments of amino acid or nucleotide sequences.
Read more
SeaView – graphical user interface for molecular phyologeny
SeaView is a multi-platform, graphical user interface for multiple sequence alignment and molecular phylogeny.
Read more
TREE-PUZZLE – maximum likelihood analysis for nucleotide, amino acid, and two-state data
TREE-PUZZLE (previously known as PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling.
Read more
TreeView X – phylogeny tree viewer
TreeView X is an open source and multi-platform program to display phylogenetic trees. It can read and display NEXUS and Newick format tree files.
Read more