EagleView – information-rich genome viewer

Last Updated on January 21, 2024

EagleView is an information-rich viewer for next-generation genome assembles with data integration capability.

EagleView can display a dozen different types of information including base qualities, machine specific trace signals, and genome feature annotations. It provides an easy way for inspecting visually the quality of a genome assembly and validating polymorphism candidate sites (e.g., SNPs) reported by polymorphism discovery tools.

It can also facilitate data interpretation and hypothesis generation.

Features include:

• Fast and memory efficient.
• Genome annotation integration.
• Pin-point view of machine-specific signals.
• Pin-point view of base quality.
• Pin-point view of read id and strand.
• Distinct mark for discrepancy sites.
• Navigation by read id and contig id.
• Data utility tools included.
• Navigation by genomic features or user defined locations.
• Zooming and printing capability.
• Navigation by both unpadded and padded positions.
• Customizable font and color for viewer.
• Internationalization support.
• Cross-platform support – runs under Linux, Mac, and Windows.

Website: www.niehs.nih.gov/research/resources/software/biostatistics/eagleview
Support:
Developer: Weichun Huang and Gabor T Marth
License: Proprietary – Academic or non-commercial use

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