oxDNA is an extensible simulation+analysis framework. The nucleic-acid-related force fields are implemented: oxDNA1, oxDNA2, oxRNA, oxNA.
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Search Results for: essential system tools
hypr-cycle – cycle through workspaces on the currently focused monitor in Hyprland
hypr-cycle is a fast, minimal Rust utility to cycle through workspaces on the currently focused monitor in Hyprland.
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InstantCLI – consolidating lots of instantOS stuff into a single CLI
InstantCLI is a powerful, Rust-based command-line tool for managing dotfiles, game saves, system diagnostics, and instantOS configurations.
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CodeContexter – simple codebase serializer for LLM Context Windows
CodeContexter is a safety-first CLI tool that aggregates your entire codebase into a single, structured file (Markdown, JSON, or XML).
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Crush – terminal-based AI assistant
Crush is a powerful terminal-based AI assistant that helps with software development tasks.
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86Box – low level x86 emulator
86Box is a low level x86 emulator that runs older operating systems and software designed for IBM PC systems and compatibles from 1981
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regname – mass renamer TUI
regname is a mass renamer utility with a text user-interface.
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Pd-L2Ork – fork of Pure Data
Pd-L2Ork is a fork of Pure Data. a visual programming language. That means you can use it to create software graphically by drawing diagrams.
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liveboat – static page generator for Newsboat feeds
Liveboat is a static page generator which turns Newsboat RSS reader feed data into beautiful static websites.
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osgrep – natural-language search that works like grep
osgrep is a tool for natural-language search that works like grep. Fast, local, and built for coding agents.
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CrossMacro – modern mouse macro recording and playback
CrossMacro is a modern mouse macro recording and playback application for Linux Wayland compositors.
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binjr – time series browser
binjr is a time series browser; it renders time series data produced by other applications as dynamically editable representations
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DoltgreSQL – Postgres-compatible version of Dolt
DoltgreSQL, or Doltgres for short, is a Postgres-compatible version of Dolt.
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Kerminal – modern terminal emulator and SSH manager
Kerminal is a modern terminal emulator that combines the power of a full-featured local terminal with advanced SSH connection management.
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Best Free and Open Source Software: November 2025 Updates
November 2025 updates to the largest compilation of recommended free and open source software available for Linux.
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wl-kbptr – move the mouse pointer with the keyboard
wl-kbptr — short for Wayland Keyboard Pointer — is a utility to help move the mouse pointer with the keyboard.
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CapacityTester – checks for fake USB flash drives
CapacityTester is a tool to test your new USB flash drive to find out if its full capacity can be used or if it’s fake.
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JBang – write and run Java scripts
JBang makes it easy to write and run Java scripts without traditional project setup.
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facsimile – terminal text editor
facsimile is a terminal text editor written in Fortran. It offers VSCode-style keybindings.
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Lobster – statically typed programming language
Lobster is a statically typed programming language with a Python-esque syntax
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