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Category: Scientific

Data Visualization

Diagrams – draw the cloud system architecture in Python code

November 3, 2023 Steve Emms Scientific

Diagrams lets you draw the cloud system architecture in Python code. Diagrams is free and open source software.

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Data Visualization

VisPy – Interactive Scientific Visualization in Python

November 3, 2023 Eilidih Parris Scientific

VisPy is a high-performance, interactive, 2D/3D data visualization open source Python library.

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Data Visualization

seaborn – Statistical Data Visualization with this Python library

November 3, 2023 Eilidih Parris Scientific

Seaborn is a Python visualization library. It provides a high-level interface for drawing attractive statistical graphics in an easy way without too much boilerplate code.

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Data Visualization

Bokeh – Python Interactive Visualization Library

November 3, 2023 Eilidih Parris Scientific

Bokeh is an interactive visualization library that targets modern web browsers for presentation.

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Data Visualization

matplotlib – Python 2D plotting library

November 3, 2023 Steve Emms Scientific

matplotlib is a pure Python 2D plotting library designed to bring publication quality plotting to Python.

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Bioinformatics

SeqViz – protein sequence viewer

November 3, 2023 Steve Emms Scientific

SeqViz is a DNA, RNA, and protein sequence viewer written in the TypeScript programming language.

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Bioinformatics

NAMD – high-performance simulation of large biomolecular systems

November 3, 2023 Steve Emms Scientific

NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems.

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Bioinformatics

VMD – molecular visualization program

November 3, 2023 Steve Emms Scientific

VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

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Bioinformatics

simuPOP – general-purpose individual-based forward-time population genetics simulation environment

November 3, 2023 Steve Emms Scientific

simuPOP is a general-purpose individual-based forward-time population genetics simulation environment.

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Bioinformatics

MUSCLE – multiple alignment software

November 3, 2023 Steve Emms Scientific

MUSCLE is a program for creating multiple alignments of amino acid or nucleotide sequences.

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Bioinformatics

SeaView – graphical user interface for molecular phyologeny

November 3, 2023 Steve Emms Scientific

SeaView is a multi-platform, graphical user interface for multiple sequence alignment and molecular phylogeny.

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Bioinformatics

TREE-PUZZLE – maximum likelihood analysis for nucleotide, amino acid, and two-state data

November 3, 2023 Steve Emms Scientific

TREE-PUZZLE (previously known as PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling.

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Bioinformatics

TreeView X – phylogeny tree viewer

November 3, 2023 Steve Emms Scientific

TreeView X is an open source and multi-platform program to display phylogenetic trees. It can read and display NEXUS and Newick format tree files.

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dna-medical

OpenEMR – electronic health records and medical practice management solution

November 1, 2023 Steve Emms Scientific

OpenEMR is a free and open-source, high quality, electronic medical record and medical practice management software.

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dna-medical

GNU Health – health and hospital information system

November 1, 2023 Steve Emms Scientific

GNU Health is a project for health practitioners, health institutions and governments. It provides the functionality of Electronic Medical Record (EMR), Hospital Management (HMIS) and Health Information System (HIS).

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dna-medical

GNUmed – electronic medical record software

November 1, 2023 Steve Emms Scientific

GNUmed is a comprehensive scalable open source medical practice management software. It lets doctors to keep a record on their patients’ health.

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dna-medical

FreeMED – Electronic Medical Record and Practice Management system

November 1, 2023 Steve Emms Scientific

FreeMED is a full featured, open source Electronic Medical Record system and Practice Administration package based on Apache, MySQL and PHP.

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dna-medical

PatientOS – for small hospitals and clinics

November 1, 2023 Steve Emms Scientific

PatientOS is a Healthcare Information System (HIS) for small hospitals and clinics. The software can be used as an EMR, EHR or as a Personal Medical System.

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dna-medical

Starviewer – medical imaging software

October 31, 2023 Steve Emms Scientific

Starviewer is cross-platform medical imaging software fully compliant with the DICOM standard for image communication and image file formats.

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dna-medical

InVesalius – 3D medical imaging reconstruction

October 31, 2023 Steve Emms Scientific

InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipment.

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