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Tag: C

DNA

WashU Epigenome Browser – visualization, integration and analysis tools for epigenomic datasets

October 17, 2023 Steve Emms Web Apps

The WashU Epigenome Browser provides visualization, integration and analysis tools for epigenomic datasets.

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CDROM

grip – cd-player and cd-ripper for the Gnome desktop

October 17, 2023 Steve Emms Multimedia

grip is a cd-player and cd-ripper for GNOME. It has the ripping capabilities of cdparanoia builtin, but can also use external rippers.

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CDROM

ripperX – rip CD audio tracks

October 17, 2023 Steve Emms Multimedia

ripperX is an open source graphical interface for ripping CD audio tracks and encoding them to Ogg, MP2, MP3, or FLAC formats.

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CDROM

Sound Juicer – audio CD extractor

October 17, 2023 Steve Emms Multimedia

Sound Juicer is a lean CD ripper using GTK+ and GStreamer. It extracts audio from CDs and converts it into audio files.

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Bioinformatics

bedtools – powerful toolset for genome arithmetic

October 17, 2023 Steve Emms Scientific

The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.

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Bioinformatics

EMBOSS – software analysis package for molecular biology

October 17, 2023 Steve Emms Scientific

EMBOSS is The European Molecular Biology Open Software Suite developed for the needs of the molecular biology (e.g. EMBnet) user community.

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Bioinformatics

Clustal Omega – multiple sequence alignment program

October 17, 2023 Steve Emms Scientific

Clustal Omega is a multiple sequence alignment program for protein and DNA/RNA using seeded guide trees and HMM profile-profile techniques.

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Bioinformatics

Basic Local Alignment Search Tool – find regions of similarity between biological sequences

October 17, 2023 Steve Emms Scientific

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.

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Library Tools

Evergreen – library software

October 17, 2023 Steve Emms Education

Evergreen is an Integrated Library System (ILS) originally developed by the Georgia Public Library Service.

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Project Management

Planner – project management software

October 17, 2023 Steve Emms Documents

Planner is a project management tool which supports Gantt charts, resource allocation and integration with other GNOME applications.

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