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Category: Scientific

Data Science

valideer – lightweight data validation and adaptation Python library

October 20, 2023 Steve Emms Scientific

valideer is a lightweight data validation and adaptation library for Python.

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Data Science

Colander – serialization / deserialization / validation library

October 20, 2023 Steve Emms Scientific

Colander is a serialization / deserialization / validation library for strings, mappings and lists.

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Data Science

Voluptuous – Python data validation library

October 20, 2023 Steve Emms Scientific

Voluptuous is a Python data validation library. It is primarily intended for validating data coming into Python as JSON, YAML, etc.

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Data Science

Schematics – Python library to combine types into structures, validate them, and transform the shapes of data

October 20, 2023 Steve Emms Scientific

Schematics is a Python library to combine types into structures, validate, and transform the shapes of your data based on simple descriptions.

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Data Science

schema – library for validating Python data structures

October 20, 2023 Steve Emms Scientific

schema is a library for validating Python data structures, such as those obtained from config-files, forms, external services.

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Data Science

jsonschema – implementation of JSON Schema for Python

October 20, 2023 Steve Emms CLI, Scientific

jsonschema is an implementation of JSON Schema for Python (supporting 2.7+ including Python 3).

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Data Science

Polynote – different kind of notebook

October 19, 2023 Steve Emms Scientific

Polynote is an experimental polyglot notebook environment. It supports mixing multiple languages in one notebook.

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Data Science

Spark Notebook – Interactive and Reactive Data Science using Scala and Spark

October 19, 2023 Eilidih Parris Scientific

The Spark Notebook is aimed at enterprise environments, providing data scientists and data engineers with an interactive web-based editor.

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Data Science

BeakerX – Successor to Beaker Notebook

October 19, 2023 Eilidih Parris Scientific

BeakerX is a collection of kernels and extensions to the Jupyter interactive computing environment.

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Data Science

Apache Zeppelin – Multi-purpose Notebook

October 19, 2023 Eilidih Parris Scientific

Apache Zeppelin is a web-based notebook that enables interactive data analytics.

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Data Science

nteract – Notebooks on your Desktop

October 19, 2023 Eilidih Parris Scientific

nteract is a desktop-based interactive computing application that is focused on accessibility and composability.

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Data Science

Jupyter Notebook – Data Science Notebook

October 19, 2023 Eilidih Parris Scientific

The Jupyter Notebook is a server-client web application to create/share documents containing live code, equations, and visualizations.

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Data Science

JupyterLab – Data Science Notebook

October 19, 2023 Eilidih Parris Scientific

JupyterLab is an extensible environment for interactive and reproducible computing.

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DNA

Apollo – genome annotation editor

October 18, 2023 Steve Emms Scientific

Apollo is a collaborative, real-time, genome annotation editor. The stack is a Java web application / database backend.

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DNA

Artemis – genome viewer and annotation tool

October 18, 2023 Steve Emms Scientific

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses.

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DNA

JBrowse – fast, scalable genome browser

October 18, 2023 Steve Emms Scientific

JBrowse is a fast, scalable genome browser built completely with JavaScript and HTML5. It can run on your desktop, or embedded in a website.

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DNA

Integrated Genome Browser – visualization for genome-scale data

October 18, 2023 Steve Emms Scientific

Integrated Genome Browser (IGB) is a fast, free, and highly customizable genome browser you can use to view and explore big genomic datasets.

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DNA

Genome Workbench – rich set of integrated tools for studying and analyzing genetic data

October 18, 2023 Steve Emms Scientific

NCBI Genome Workbench is an integrated application for viewing and analyzing sequences.

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DNA

Tablet – graphical viewer for next generation sequence assemblies and alignments

October 18, 2023 Steve Emms Scientific

Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.

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CDROM

fre:ac – audio converter and CD ripper

October 17, 2023 Steve Emms Scientific

fre:ac is an audio converter and CD ripper that supports a wide range of popular formats and encoders.

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