Last Updated on January 21, 2024
EagleView is an information-rich viewer for next-generation genome assembles with data integration capability.
EagleView can display a dozen different types of information including base qualities, machine specific trace signals, and genome feature annotations. It provides an easy way for inspecting visually the quality of a genome assembly and validating polymorphism candidate sites (e.g., SNPs) reported by polymorphism discovery tools.
It can also facilitate data interpretation and hypothesis generation.
Features include:
- Fast and memory efficient.
- Genome annotation integration.
- Pin-point view of machine-specific signals.
- Pin-point view of base quality.
- Pin-point view of read id and strand.
- Distinct mark for discrepancy sites.
- Navigation by read id and contig id.
- Data utility tools included.
- Navigation by genomic features or user defined locations.
- Zooming and printing capability.
- Navigation by both unpadded and padded positions.
- Customizable font and color for viewer.
- Internationalization support.
- Cross-platform support – runs under Linux, Mac, and Windows.
Website: www.niehs.nih.gov/research/resources/software/biostatistics/eagleview
Support:
Developer: Weichun Huang and Gabor T Marth
License: Proprietary – Academic or non-commercial use
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