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PyMOL

PyMOL

PyMOL is an OpenGL molecular graphics system written in Python.

PyMOL is a molecular graphics system with an embedded Python interpreter designed for real-time visualization and rapid generation of high-quality molecular graphics images and animations.

It is fully extensible and available free to everyone via the "Python" license. Although a newcomer to the field, PyMOL can already be used to generate stunning images and animations with unprecedented ease. It can also perform many other valuable tasks (such as editing PDB files) to assist you in your research.

 PyMOL 1.7.2.1

Price
Free to download

Size
8.3MB
License

Open-source, user-sponsored

Developer
DeLano Scientific LLC

Website
www.pymol.org

System Requirements
3D OpenGL graphics acceleration
Python
tcl
tk
libpng
zlib
glut
glut-devel
pmw
numeric

Support:
Wiki, Tutorials, eMovie, PyMOL Plugins, Cams PyMOL Page

Selected Reviews:
wordpress

Features include:

  • Real-Time 3D visualization
  • Publication quality renderings
  • Extensive animation capabilities
  • Support for X-ray crystallography
  • Modular Architechture
  • Volume visualization for unique display of volumetric data and simultaneous visualization of multiple iso-surfaces
  • Electron density map generation from reflection data
  • Stereochemical labeling
  • Atom Typing; MacroModel and SYBYL/MOL2 support
  • OpenGL Shaders (GLSL) for improved on-screen rendering (cartoons, sticks, surfaces, volumes)
  • Dynamic measurements (distances, bond angles and dihedral angles)
  • Flexible API for custom applications
  • Support for bg_gradient when ray tracing
  • Many non-standard nucleic acids (PSU, 5MU, 7MG, MIA, H2U, 4SU, MA6, UR3, 5MC, 40C, 2MG, TM2, 2MG) render correctly as cartoons
  • Surface color smoothing
  • Frame buffer-based antialiasing for real-time rendering
  • Optimized anaglyph colors and intensities for an improved 3D viewing experience
  • Real-time and ray-traced ambient occlusion
  • Support for reading compressed Maestro (.maegz)** and PyMOL session files (.pze, pzw, .pse.gz, .psw.gz)
  • Written in C and Python

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Last Updated Saturday, August 30 2014 @ 05:03 PM EDT


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