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Top : Software : Scientific : Biology : Analysis

Pick of the Bunch: Command line Twitter Clients
Twitter is an extremely popular social network. Twitter, at its most basic, is a series of short online statements or 'tweets'. Twitter forces the writer to be extremely succinct - with only 140 characters (including spaces) to make each announcement.

(Read more) (OGo) is an Open Source collaborative software (groupware) server for multiple clients. Read more


  • ARB
    ARB is a graphically oriented package comprising various tools for sequence database handling and data analysis.
  • BioConductor
    BioConductor produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays. The team is based at the Biostatistics Unit of the Dana Farber Cancer Institute at Harvard Medical School/Harvard School of Public Health. Participation of interested developers/investigators at other institutions is encouraged. Read more
  • BioWish
    BioWish is a molecular biology command extension to Tcl/Tk. Features include: sequence statistics, G+C content in different positions, database searches with BLAST, and more.
  • CNS
    Crystallography & NMR System: for macromolecular structure analysis.
  • Fqutils
    Fqutils provides a basic set of bioinformatics commandline tools for working with sequence data in FASTQ format.
  • Intrinsic Noise Analyzer
    iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored when some molecules are present in very low copy numbers only, as is the case in living cells
  • LabKey Server
    LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies,
  • NAMD
    NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. Read more
  • SeqPup
    SeqPup is a biological sequence editor and analysis program. It includes links to network services and external analysis programs.
    UGENE is free open-source cross-platform set of integrated bioinformatics software. Read more

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