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Top : Mac OS X : Software : Scientific : Biology

Highlights
Backup with these DeDuplicating Encryption Tools
This article provides a quick roundup of 6 deduplicating encryption backup tools.

(Read more)
Numerical Recipes in Fortran 77: Second Edition - Volume 1 - The Art of Scientific Computing
In a self-contained manner Numerical Recipes: The Art of Scientific Computing proceeds from mathematical and theoretical considerations to actual practical computer routines. With over 100 new routines bringing the total to well over 300, plus upgraded versions of the original routines, this edition remains a practical, comprehensive handbook of scientific computing.

Links:

  • AmplifX
    The main purpose of AmplifX is to seek in a collection of primers, such as any molecular biologist get in his refrigerators, those which can be use to amplify a fragment into a target sequence, for example, and particularly, to design strategies to screen recombinant clones by PCR.
  • CellProfiler
    CellProfiler cell image analysis software is designed for biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
  • CLC Free Workbench
    CLC Free Workbench creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.
  • CLC Sequence Viewer
    CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.
  • Creatures
    Creatures is a program for the exploration of evolution, natural selection, genetic programming, and artificial life.
  • EnzymeX
    a program for molecular biologists, developed to help you determine which restriction enzymes you should use to cut your DNA of interest. In addition, it gives you all the specific properties of these enzymes so that you can make sure that every single digestion is a success
  • Fetal Growth
    Fetal Growth is a tool for professionals involved in pregnancy assessment for monitoring obstetric measurements over time.
  • FoldingObserver
    FoldingObserver gives you a simple possibility to monitor your Folding@Home clients within your local network. It works with the command line client, the screensaver and the standalone version of Folding@Home. You can keep track of lots of details of your clients.
  • LSystem
    LSystem is a free Mac OS X application for exploring Lindenmayer systems
  • Molegro Virtual Docker
    (commercial) Molegro Virtual Docker is an integrated platform for predicting protein - ligand interactions. Molegro Virtual Docker handles all aspects of the docking process from preparation of the molecules to determination of the potential binding sites of the target protein, and prediction of the binding modes of the ligands.
  • ProteinGlimpse
    ProteinGlimpse is a free widget for visualizing macromolecules retrieved from the RCSB Protein Data Bank.
  • RAAViewer
    RAAViewer allows viewing of labeled images of human anatomy. The labels are linked to a database that offers in-depth descriptions of the parts of anatomy.
  • Serial Cloner
    Serial Cloner provides tools with an intuitive interface that assists you in DNA cloning, sequence analysis and visualisation. It reads and write DNA Strider-compatible files and import and export files in the universal FASTA format (as well as in pDRAW32 format). Powerful graphical display tools and simple interfaces help the analysis and construction steps in a very intuitive way.
  • Swiss-PdbViewer
    Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface.
  • XplasMap
    XPlasMap draws plasmid maps, showing features such as genes, promoters, multiple cloning sites, and restriction enzymes. The maps are designed to be easily modified (e.g. to map new inserts in a vector), and features can be customized in a number of ways.



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