LinuxLinks.com
Newbies What Next ? News Forums Calendar
Home | Register | News | Forums | Portal Pages | MyLinks | New | Hot | Link Us

Search/Browse

 Category Gateway
More Options
Category:  


LinuxLinks News
 · Nifty Free Image Viewers
 · Compact Text Editors Great for Remote Editing and Much More
 · Excellent Subtitle Editors
 · Small Console Menu Utilities
 · Make Downloading Files Effortless
 · Free Office Suites that Cut The Mustard
 · Low-Spec Hardware? Try these Desktop Environments
 · Powerful Command-line File Transfer Programs
 · Great Apps to Take Notes
 · Exciting New Terminal Emulators
(more...)

 

Latest Links
jdkdrum
lolcat
(more...)

 



Top : Java : Scientific : Biology

Highlights
Nifty Free Image Viewers
One of my favorite adages is "A picture is worth a thousand words". It refers to the notion that a still image can convey a complex idea. Images can portray a lot of information quickly and more efficiently than text. They capture memories, and never let you forget something you want to remember, and refresh it in your memory.

(Read more)
TuxGuitar
TuxGuitar is a multitrack guitar tablature editor and player written in Java-SWT, It can open GP3 and GP4 files. Read more

Links:

  • Artemis
    a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
  • Cell Electrophysiology Simulation Environment
    Cell Electrophysiology Simulation Environment (CESE) is a comprehensive framework specifically designed to perform computational electrophysiological simulations, for example, simulations of cardiac myocyte electrical activity. CESE is useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
  • FORESTER
    FORESTER is being developed as a framework for (automated) sequence function prediction based on phylogenic information - phylogenomics. Currently, it is composed of Java classes representing basic data structures, algorithms and tools to operate on phylogenetic trees.
  • GenPlay
    GenPlay is a multi-purpose genome analyzer and browser. It is a fast, easy to use and stable tool for rapid analysis and data processing.
  • iLAP
    iLAP (Laboratory data management, Analysis, and Protocol development) is a workflow-driven information management system specifically designed to create and manage experimental protocols and to analyze and share laboratory data.
  • JMV
    a molecular viewer written in Java and Java3D. JMV is designed to be an easy-to-use, platform neutral, molecular visualization tool, which can be used standalone or integrated into a larger program
  • JSV
    Java Structure Viewer
  • Mirth
    Mirth is a cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports.
  • MolSurfer
    a graphical tool that links a 2D projection of a protein-protein interface to a 3D view of the protein structures. This Java-based software uses the representation of are projected onto the interface. The second window, WebMol, displays 3D representations of the molecules. The two windows are linked in such a way that mouse manipulations on the 2D-map window change the map and the 3D view
  • Pfaat
    Pfaat is a Java-based protein sequence alignment application designed to facilitate the analysis, curation, and annotation of large protein sequence families. Key features of Pfaat include the ability to align collections of sequences, cluster and/or group sequences into subfamilies, analyze sequences based on a number of similarity criteria, visualize protein structure, and annotate sequences and specific residue positions with text descriptions.
  • Sequlator
    Sequlator is a multiple sequence alignment editor with a pairwise alignment, reverse complement, editing and navigation functions. Sequlator can be used merely as a tool for viewing and manipulating multiple alignments of nucleotide sequences, but the main purpose of Sequlator is assembly and analysis of sequencing reads from newly isolated recombinant plasmids or PCR fragments.
  • Simbrain
    Simbrain is a neural network which emphasizes ease of use, environmental interaction (most networks are abstracted from environments), creative design, and sophisticated gauging.
  • Spatiotemporal Epidemiological Modeler
    The Spatiotemporal Epidemiological Modeler (STEM) tool is designed to help scientists and public health officials create and use spatial and temporal models of emerging infectious diseases. These models could aid in understanding, and potentially preventing, the spread such diseases.
  • Watchmaker
    Watchmaker is an extensible, high-performance, multi-threaded, object-oriented framework for implementing platform-independent evolutionary computation (genetic algorithms, etc.) in Java.
  • Wildlife Stock Monitor
    (commercial) Wildlife Stock Monitor is a grid-based GIS system for inventorying biotopes.
  • YajaLife
    a cross-platform artificial life/cellular automaton simulator game written in Java. It is inspired by several principles and ideas used in the well-known a-life programs Tierra and Avida



Share this Page
Bookmark and Share
Submit this page to popular social networks such as Digg, Twitter, StumbleUpon and more.


My LinuxLinks
MyLinks
  • Bookmarked links
  • Emailed Newsletter
  • Your own profile

  • Top Applications
    Top Free Software
    6 Lean Desktops
    14 File Managers
    21 Backup Tools
    21 Window Managers
    21 Productivity Tools
    21 Text Editors
    21 Video Emulators
    21 Home Emulators
    42 Graphics Apps
    42 Scientific Apps
    42 Email Apps
    12 Instant Messaging
    42 Games
    42 More Games
    21 More Games
    42 Audio Apps
    42 Video Apps
    80 Security Apps
    Free Console Apps
    14 Multimedia
    'Free' Proprietary
    21 Closed-Source Apps
    Top Commercial Apps
    42 Games
    Free Web Software
    21 Web CMS
    14 Wiki Engines
    8 Blog Apps
    6 eCommerce Apps
    Other Articles
    Migrating from Windows
    Distribution Guide
    Distro Portal Pages

    Migrate to Linux
    Thinking of switching to Linux? Check out our Linux Equivalents to Windows Software section, highlighting popular Linux equivalents to Windows software.

    This feature also includes over 150 individual software portal pages including Blender, Scribus, OpenOffice.org, Evolution, Eclipse, K3b, and MythTV, providing a wealth of essential information.

     

    Distribution Guides
    Distro Guide

    Debian
    Fedora
    Gentoo
    Mandriva
    OpenSuSE
    RedHat
    Slackware
    Ubuntu
    Xandros

    Absolute
    Linux Mint
    64 Studio

    LiveCDs
    Berry Linux
    GoblinX
    KNOPPIX
    Kubuntu
    NimbleX
    PCLinuxOS
    Sabayon
    SimplyMEPIS
    Xubuntu

    Entire List

     

    Services
    Web Calendar
    Linux Licenses

    Advertise at LinuxLinks.com

     

    Latest Portal Pages
    Mixxx
    energyXT2
    GRASS
    uDig
    QGIS
    gretl
    SPSS

     

    Add Link | Modify Link | About | FAQ | Guide | Privacy | Awards | Contact | SourceFiles.org
    Portal Version 0.7. Intel Blade.
    Comments to the webmaster are welcome.
    Copyright 2009 LinuxLinks.com All rights reserved.